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- ─────────────────────────────────────Main Menu
-
- Welcome to JEPRS, the
-
- |J|ournal &
- |E|ditorial
- |P|ersonal
- |R|eference
- |S|ystem
-
- JEPRS is a database system designed to
- manipulate "references" or "citations" to the
- (scientific) literature. You can add, list,
- export, search, or format any or all of the
- references in the database. JEPRS (pronounced
- |Jeepers!|) is a user friendly program that's
- menu driven. You usually have the option of
- pressing the |F1| (Help) key, which will give
- you instant help.
-
- |Selecting Commands & Using Function Keys|
- The first thing you see is the Main Menu
- (at the top of this screen). This is the
- heart of the program. To select a command,
- either type the first letter of that command,
- or use the left and right arrow keys to high-
- light one of the commands, and then press
- |Enter|. For the Help and Exit commands, you
- also have the choice of using the function key
- shown (|F1| or |Esc|, respectively). Note that
- the Global Defaults (|F2|) command does not have
- a corresponding letter command. If you're not
- sure what a command does, enter it anyway and
- then press the |F1| key. This will give you
- help with the current command. (Help is
- always context-sensitive.)
- Note that some function keys have the
- same functions no matter what section of the
- program you are using. For example, |Esc| will
- always bring you back to the previous menu,
- and |F1| will always get you help.
- While in the Help Screen (as you are
- now), you can use several keys to move around.
- The up & down arrow keys move the text up or
- down 1 line at a time. The |PgUp| & |PgDn| keys
- move the text up or down one screen at a time.
- |Home| moves you to the first screen and |End|
- moves you to the last. Finally, |Esc| brings
- you back where you were before you asked for
- help.
-
- |JEPRS's Screen Design|
- Screens are generally broken up into 5
- sections. At the very top is the Screen Name,
- such as "Main Menu" or "Search Menu". Below
- that is the Menu Line, which lists all the
- available commands. The lower 23 lines are
- divided into 3 sections. The top left is
- generally a "Format" section which tells you
- which format will be used. The bottom left is
- a "Messages" section, which tells you which
- function keys you can use, as well as giving
- you a short description of what you are sup-
- posed to do.
- Finally, the right side of the screen
- shows you the currently selected "Defaults".
- If on the Main Menu it says:
- |Unregistered Version|
- in bold letters near the bottom right side,
- then it means you have not registered (paid
- for) your copy of JEPRS. To get more infor-
- mation on ordering JEPRS, go to the Global
- Defaults Menu (press |F2| while at the Main
- Menu), then press |D|efaults, and then
- |O|rdering information. Once you have
- registered your copy of JEPRS, you will no
- longer be bothered with the opening reminder
- screen, and your Main Menu will say:
- |Registered Version |
-
-
- |Command Line Parameters|
- JEPRS can be started with the following
- command line parameter:
-
- C:\>|JEPRS <Config filename>|
-
- ... where |<Config filename>| is a valid file-
- name for your Config file, including a path if
- necessary (e.g., |JEPRS2.Cfg| ...or...
- |C:\JEPRS\MyRefs.Cfg|)
-
- ─────────────────────────────────────────Input
-
- For the input, you must specify where
- JEPRS can expect the reference numbers to come
- from. Valid choices are:
-
- |K|eyboard. This is the default. When you
- specify this input, you will be queried for
- each reference number that you want to use.
-
- |N|umber File. If you specify this, JEPRS
- will automatically look for a file by the name
- specified on the Main Menu next to "Number
- File Name". (You can change the name of this
- file on the Global Defaults Menu.) The Number
- file should be a DOS text file containing the
- numbers of the references you wish to use.
- Each reference number MUST be on a separate
- line, and MUST be the first thing on the line
- (but you can place comments anywhere to the
- right of the numbers).
-
- |R|eference File. When this is selected,
- you will then be asked to enter the number of
- the first reference, and then the number of
- the last reference, to be used. The defaults
- are the first and last references of the cur-
- rent Reference File listed on the Main Menu.
- You can change the name of this file on the
- Global Defaults Menu.
-
- |W|ord Processor File. If selected, JEPRS
- will search through the file specified on the
- Main Menu next to "Word processor input file"
- and look for JEPRS codes for reference numbers
- (such as {J#123} for reference #123). It
- will then use these reference numbers for
- output. JEPRS can also replace these codes
- with numbers, or authors and years.
-
- ────────────────────────────────────────Output
-
- JEPRS has the ability to direct its
- output to any of a variety of places. The
- default is always the screen, but you can
- request any combination of the following.
-
- |S|creen. The results of the current oper-
- ation are directed to the screen. For example
- during a Search, the matched references are
- displayed on the screen and you can scroll
- through them using the cursor keys; during a
- Format or Export operation, the formatted
- references are displayed on the screen and
- you can press the |Scroll Lock| key to stop
- and re-start the display.
-
- |P|rinter. The results of the current
- operation are directed to your printer.
- Please make sure your printer is turned on
- and is "on-line" before selecting this as
- output!
-
- |T|ext File. JEPRS will automatically send
- the output to the file specified on the Main
- Menu as the "Text File Name" (this file name
- can be changed on the Global Defaults Menu.)
- The output will be automatically formatted
- according to the currently defined Format
- Style (see the Format Menu). There are two
- important things to note:
- 1. When sending output to a Text File
- from the Search Menu, none of the printer
- codes will be sent to the file. If you want
- printer codes within your Text File, the out-
- put MUST be generated at the Format Menu. In
- addition, the margins are predefined as:
- left margin = 8, characters per line = 65,
- and lines per page = 54.
- 2. If "Text Formatting" = "No" on the
- Global Defaults Menu, then the left margin is
- equal to zero and no printer codes are sent
- to the Text File.
-
- |N|umber File (not available on all menus).
- Rather than having the TEXT of the reference
- sent to a file, the NUMBER of the reference is
- sent to a file if this output is selected. It
- is sent to the file called "Number Filename"
- listed on the Main Menu. This filename can be
- changed on the Global Defaults Menu. The
- Number File can also be used as INPUT for for-
- matted output on the Format Menu and the
- Export Menu.
-
- |W|ord Processor File (not available on all
- menus). The name of this file is listed on
- the Main Menu next to "Output word processor
- file". JEPRS will send the text of each
- reference to this file, which is compatible
- with your word processor.
-
- ╦────────────────────────────────Save/Edit Menu
-
- If you have modified your Printer and/or
- Format Style Definitions, you can now perma-
- nently save them in your Config file. Just
- press |S|ave to save them. Otherwise, press
- |Esc| to return to the Global Defaults Menu;
- in that case, the changes you made will be
- kept in memory, but will be lost once you
- choose a new Definition or exit JEPRS.
-
- If you want to modify the same or a
- different Definition, choose |E|dit.
-
- ─────────────────────────────────Format Styles
-
- You can now choose one of the Format
- Styles you have previously defined. You sel-
- ect a format by using the up and down arrow
- keys, the |PgUp| and |PgDn| keys, and pressing
- |Enter|. Or just enter the number of the
- format at the "Format Style:" prompt.
-
- If you decide you want to use the format
- style that has already been selected, just
- press |Esc|, and no change will be made.
-
- The format styles can be edited at the
- Global Defaults Menu by selecting |D|efaults and
- then |J|ournal Definitions. More help is
- available when you are editing the journal
- definitions.
-
- ────────────────────────────Edit Format Styles
-
- You can now modify this definition in
- order to specify the output styles that you
- need for your work. Remember, you can modify
- any of the 30 format styles in your Config
- file.
- Move around the screen from field to
- field by using the up & down arrow keys. Each
- field can be edited using JEPRS's standard
- editing keys: |Ins|, |Del|, |BackSpace|, left &
- right arrow keys, |Home|, and |End|. You can also
- use |^P| (hold down the |Ctrl| key and press the
- |P| key once) to enter control characters. When
- you are finished editing, press |Esc| to return
- to the menu at the top of the screen.
-
- Here is a brief description of the
- entries JEPRS expects for each of the fields:
-
- |Name:| Enter any name; this name will appear
- on the menu where you choose which format to
- use for output.
-
- |Sort:| Choose |A|uthor if this journal
- requires that the references be sorted by
- author; |Y|ear if you want the references
- sorted by year; |J|ournal to sort by the
- journal title; or choose |N|one if no sorting
- is required.
-
- |Indent Length:| If the second and subsequent
- lines of each reference should be indented a
- few spaces compared to the first line, enter
- the number of spaces that it should be in-
- dented here.
-
- |Replace WP code with:| This is only used if
- you specify "Input=Word processor file" at the
- Format Menu. If you choose "Author+Year",
- then JEPRS codes in your word processor
- document are replaced by the author(s) and
- year; if it is "Numbers", then JEPRS codes
- are replaced by sequential numbers.
-
- |Periods for Initials:| New with version 2.5
- is the ability to insert periods between
- the authors' initials. For example, if you
- enter your authors as "Miranda LM, Wright
- WE", then they will be converted to
- "Miranda L.M., Wright W.E." upon output.
- To get this automatic conversion, choose
- |A|dd periods; if you don't want conversion,
- choose |N|o periods.
-
- |Journal:| Enter the format specifications that
- your journal requires for a reference citation
- that is a journal. Use the |User's Guide| and
- the codes listed on the bottom of the screen
- as a guide.
-
- |Abstract:| Enter the format specifications that
- your journal requires for a reference citation
- that is an abstract. Use the |User's Guide| and
- the codes listed on the bottom of the screen
- as a guide.
-
- |Book:| Enter the format specifications that
- your journal requires for a reference citation
- that is a book. Use the |User's Guide| and
- the codes listed on the bottom of the screen
- as a guide.
-
- |Comments:| Enter any comments you want in this
- field. These comments are for your use only;
- JEPRS does not use them.
-
- ╩────────────────────────────────Select Printer
-
- Choose one of the printer definitions
- listed to use for output to your printer. Use
- the up & down arrow keys or type in the number
- you want and press |Enter|.
-
- If you press |Esc|, the previously chosen
- printer definition will be used.
-
- ───────────────────────Edit Printer Definition
-
- This definition is used by JEPRS to send
- special codes to the printer for margins,
- underlining, bold printing, etc. If none of
- these work for you, you will have to modify
- one of the pre-existing definitions to suit
- your printer, as described here. Note that
- if you need to enter a special character
- that is not a key on your keyboard (for exam-
- ple, a |^R| or DOS decimal character |237|), you
- can press |^P| first and then enter the
- character via the control key; or press |^P|
- and then hold down the |Alt| key and enter the
- decimal number on the number pad and then let
- go of the |Alt| key (this doesn't work on all
- PC clones).
-
- |Name:| Enter the name you want to be displayed
- on the printer selection menu.
-
- |Initialization Code:| These characters will be
- sent to your printer every time JEPRS is about
- to send formatted output to the printer.
-
- |Reset Code:| These characters will be sent to
- your printer every time JEPRS is finished
- sending formatted output to the printer.
-
- |Title:| These characters will be printed on
- the second line of the first page of formatted
- output.
-
- |Header:| These characters will be printed on
- the top line of each page of formatted output.
- You can enter the special code |\P| anywhere on
- this line, and it will be replaced by the cur-
- rent page number.
-
- |Left margin:| This many characters are skipped
- at the beginning of each line to leave a left
- margin.
-
- |Characters per line:| JEPRS will automatically
- wrap text around to the next line when this
- many characters have been sent on one line.
-
- |Pause after each page:| Enter "Yes" if you
- have to hand feed each sheet of paper to your
- printer. Enter "No" if you have continuous
- feed paper.
-
- |Top margin:| Enter the number of lines you
- want JEPRS to skip at the top of the page.
-
- |Lines per page:| After this many lines are
- printed, JEPRS skips to the next page.
-
- |Form feed last page:| Enter "Yes" if you want
- JEPRS to eject the last page from your printer
- after formatted output is sent to it. Other-
- wise, enter "No".
-
- |Bold|, |Italic|, etc.: Enter the codes your
- printer needs to Begin and End each of the
- special attributes listed. Consult your
- printer manual and JEPRS Appendix in the
- JEPRS documentation files for more informa-
- tion.
-
- |Comments:| Enter any comments here; this is
- for your use only (JEPRS ignores these).
-
- ───────────────────────────────Global Defaults
-
- The Global Defaults Menu allows you to
- modify the pre-programmed defaults that are
- set either by the Config File or (if you
- haven't specified one) by JEPRS itself.
-
- |Files:|
- Press |F|iles, then select one of the files
- by using the arrow keys or first letter. You
- can then change the name (including drive and
- subdirectory) of that file. Note that the new
- name will be used only until you exit JEPRS;
- once you exit, the name will be discarded. If
- you want to permanently change the name of the
- file, go to the |D|efaults and invoke the |S|ave
- defaults+files command. Here is a brief run-
- down of the files:
-
- |D|rive and directory refers to the DOS
- disk and/or subdirectory where all of the fol-
- lowing files are located.
-
- |R|eference file refers to the main data-
- base file where the references are kept. You
- will also be asked for a reference Key file.
- The Key file refers to the file that keeps
- track of the position of the references in the
- main database (reference) file. (There must
- be a Key file for every Reference file!)
-
- |W|ord processor input file is a file you
- create with your word processor. JEPRS can
- read this file if you put reference numbers in
- it like this: {J#123} Then JEPRS will
- replace the code above with either sequential
- numbers, or with the author & title.
- |O|utput word processor file is a file that
- JEPRS can create at the Format Menu. It will
- contain all the codes your word processor uses
- such as boldface, italics, etc.
-
- |T|ext file refers to a file that JEPRS
- can create which will contain certain refer-
- ences in an ASCII file. This is accomplished
- on the |S|earch Menu and the |L|ist Menu by
- pressing the |F10| key. It can also be made
- by specifying |T|ext file for |O|utput on the
- |F|ormat Menu and the |U|tilities/|E|xport Menu.
- |N|umber file refers to a file containing
- numbers specifying certain references from the
- database. You can create this file yourself
- with a text editor, or JEPRS can add reference
- numbers to it by pressing the |F8| key in the
- |S|earch and |L|ist options. It can also be made
- by specifying |N|umber file for |O|utput on the
- |F|ormat Menu and the |U|tilities/|E|xport Menu.
- JEPRS uses the numbers in this file for for-
- matting at the |F|ormat Menu.
-
- |C|onfig file refers to the file that
- contains the instructions for formatting the
- output from the |F|ormat Menu, as well as the
- default filenames and other Global Defaults.
-
- |I|mport file allows you to add to your
- database by reading in a file that is format-
- ted according to one of the standard biomedi-
- cal formats (MedLine, CL-MedLine, or BRS/
- Colleague). This file is used on the
- |U|tilities/|I|mport File Menu.
- |E|xport file is the file JEPRS creates
- when you export references at the |U|tilities/
- |E|xport File Menu.
-
- |Defaults:|
- |E|rror/warning beep refers to a beep
- JEPRS will make if it wants to alert you that
- something has gone wrong. If you don't want
- to hear any noise, "just say No" and JEPRS
- will never beep at you!
-
- |T|ext file formatting: If "Yes", then
- printer codes will be sent to the Text File
- if more than one reference is sent to the Text
- File. If "No", then no codes are sent. See
- the documentation for more information.
-
- |U|se Printer #: Allows you to choose
- which printer definition to use.
-
- |S|ave defaults+files: Saves your
- Defaults and Filenames (but not printer or
- journal definitions) in the currently defined
- Config File.
-
- |J|ournal definitions: You can choose
- the journal definition to use for formatting,
- edit it onscreen, and save it to your Config
- file.
- |P|rinter definitions: You can choose
- the printer definition for printing, edit it
- onscreen, and save it to your Config file.
-
- |C|olors for screen: Allows you to
- permanently change the screen colors to all
- black & white, to avoid blinking characters,
- or to keep the Formatting colors all uniform.
-
- |F|orm-feed to printer: You can use this
- to send a "form-feed" to your printer, so it
- will eject the current page.
-
- |O|rdering information will present you
- with information on how to order the latest
- version of JEPRS if you want to update your
- copy, or how to order your own copy if you are
- currently using someone else's.
-
- |Go to DOS:|
- |G|o to DOS allows you to temporarily
- return to MS-DOS. You can do this to run
- another program or get a directory listing,
- for example. Note that you must type |Exit| and
- then press |Enter| to return to JEPRS. (You may
- mess up your data files if you try to run
- JEPRS a second time when you're in the |G|o To
- DOS window!)
-
- 3────────────────────────────────Add References
-
- The |A|dd command allows you to add ref-
- erences to your current database. Simply type
- in the title, authors, journal, etc., just as
- the screen shows. The authors should be
- entered last name first, followed by a space
- and then first initials; if more than one
- author, separate the authors by commas:
-
- |Miranda LM, Lin VK-O, Wright WE|
-
- Note that you do not add an "and" or "&"
- before the last author's name; JEPRS can do
- that for you during formatting.
-
- The arrow keys will move the cursor
- around on the display. |Home| will take the
- cursor to the first character of the line; |End|
- will move you to the last character of the
- line. |Tab| will move you forward from field to
- field; |Shift|+|Tab| will move you backwards from
- field to field. |Ctrl| + the left/right arrow
- keys will move you from word to word.
-
- |PgUp| will move the cursor to the title;
- |PgDn| will move the cursor to the keywords.
-
- |BackSpace| will delete the previous char-
- acter (just like a typewriter), while pressing
- |Delete| will delete the current character.
- |Ctrl|+|End| will delete from the cursor position
- to the end of the line.
-
- |Insert| will change the display from
- Insert to Overwrite mode or vice versa (you
- can check the lower right corner of the
- display to see which mode you are in). Insert
- mode causes characters to the right of the
- cursor to be moved as you type. In Overwrite
- mode, characters to the right of the cursor
- are simply written over and erased.
-
- When you have finished entering this
- reference, press |Esc| to bring you to the menu
- at the top of the screen. More help is avail-
- able at that menu.
- After selecting |S|ave or |A|bandon, you must
- then select |C|ontinue (in which case you can
- add more references) or |M|ain menu (or |Esc|) to
- return to the Main Menu.
-
- 7───────────────────Save/Abandon/Edit Reference
-
- |S|ave will place the reference you just
- edited into the database. |A|bandon causes
- JEPRS to ignore the edited text. |E|dit will
- allow you to go back to the reference and
- continue to edit it. |H|elp brings up this
- help screen.
-
- L───────────────────────────────List References
-
- You now have the ability to view the
- database one reference at a time. Just type
- in the number of the reference you wish to
- see. Or, you can press |PgUp| to see the previ-
- ous reference in the database, or |PgDn| to see
- the next one (...except if you got here from
- the Search Results screen; in that case |PgUp|
- will display the prior found reference, and
- |PgDn| will display the next found reference).
-
- |Function Keys:|
-
- The |F4| key will allow you to Edit the
- reference you are now viewing. More help is
- available at the Edit Menu.
-
- |F8| will insert only the number of the
- current reference into a Number File, for sub-
- sequent formatting at the |F|ormat command on
- the Main Menu, or for exporting at the |E|xport
- command on the Utilities Menu.
-
- Pressing |F9| will take the reference
- currently displayed and print it on your
- printer in the currently defined journal
- format.
-
- |F10| will insert the current reference
- into a Text File using the currently defined
- journal format.
-
- As always, |Esc| will take you back to
- the Main Menu.
-
- e───────────────────────────────Edit References
-
- The Edit command (|F4|) allows you to edit
- references, in case you made a mistake in your
- original entry or new information becomes
- available. Since JEPRS doesn't have a Delete
- Reference function, the Edit function can be
- used to overwrite an old reference, and
- replace it with a new one. The command keys
- are exactly the same as the ones for the |A|dd
- command, and are described below for your
- convenience:
-
- The arrow keys will move the cursor
- around on the display. |Home| will take the
- cursor to the first character of the line; |End|
- will move you to the last character of the
- line. |Tab| will move you from field to field,
- and |Shift|+|Tab| will move you backwards from
- field to field.
-
- |PgUp| will move the cursor to the title;
- |PgDn| will move the cursor to the keywords.
-
- |BackSpace| will delete the previous char-
- acter (just like a typewriter), while pressing
- |Delete| will delete the current character.
-
- |Insert| will change the display from
- Insert to Overwrite mode or vice versa (you
- can check the lower right corner of the
- display to see which mode you are in). Insert
- mode causes characters to the right of the
- cursor to be moved as you type. In Overwrite
- mode, characters to the right of the cursor
- are simply written over and erased.
-
- When you have finished editing this
- reference, press |Esc| to bring you to the menu
- at the top of the screen. More help is
- available at that menu.
-
- ~───────────────────────────────────Search Menu
-
- To start a search, enter the |T|erms you
- wish to search for, then enter the |G|o command.
- (More help is available when entering |T|erms.)
- You also have the option of changing any of
- the defaults or the outputs listed on the
- right side of the screen. Press |O| to change
- the Output, or |D| to change the Defaults.
-
- |Output:|
- |O|utput allows you to specify where the
- references found in a search are directed to.
- The default is the screen, but you can turn on
- any combination of screen, printer, text file,
- and number file.
-
- |Defaults:|
- |B|egin allows you to specify the reference
- number at which the search will begin. The
- default is #1.
-
- |E|nd allows you to specify the reference
- at which searching will end. The default is
- the last reference in the database.
-
- |M|atches allows you to specify the maximum
- number of references that JEPRS should find in
- the current search. (|B|egin, |E|nd, and |M|atches
- can be used together in order reduce the total
- search time used; they are useful if you have
- some idea of the total number of references
- you want, or their location within the data-
- base.) The default is the total number of
- references in the database.
-
- |U|ppercase determines whether the current
- search is case-sensitive or case-insensitive.
- If Uppercase = No, then the terms are searched
- for exactly as you type them. If Uppercase =
- Yes, both the search terms you enter, as well
- as the references in the database, are con-
- verted to uppercase before comparing them.
-
- |S|ort determines whether the references
- are sorted before being displayed. If |S|ort is
- is set to |A|uthors, the references are sorted
- by first author; if |Y|ear, then they are sorted
- by reference year; if |J|ournal, then they are
- sorted by journal title before being sent to
- the specified output. If |S|ort=|N|one, then the
- references are displayed in the order they
- were found in the database file.
-
- é──────────────────────────────────Search Terms
-
- The search |T|erms are the field(s) you
- wish to search through (e.g., |A|uthors or
- |T|itles) and the text for which you are search-
- ing. The Messages window contains a list
- of all the valid Terms. The simplest search
- is just one term, but you can also combine
- terms by separating the field names with
- operators (|+| |-| & |/|) and parentheses (see
- below).
-
- An example of a simple search would be if
- you were looking for all the articles written
- by "Wright" in your database. To find them,
- enter |A| at the "Enter Search:" prompt. Then
- enter |Wright| on the next line. Note that
- the "A" blinks to let you know that you should
- be entering text for an |A|uthor search. Once
- back at the Search Menu, press |G|o to start the
- search.
-
- |Compound Searches:|
- The next level of complexity would be a
- double search: you want to find all refer-
- ences for articles written by "Wright" that
- also appear in the "Journal of Cell Biology".
- At the "Enter Search:" prompt, enter |A+J|
- (|A|uthor and |J|ournal). On the first blank
- line, enter |Wright| (note that the "A" after
- "Enter Search:" will blink to remind you to
- enter text for an Author search). On the 2nd
- blank line, enter |J Cell Biol| (this time, the
- "J" blinks as a reminder). Again, enter |G|o at
- the Search Menu to start the search.
-
- More complex searches are possible. To
- search for articles written by "Wright" or
- "Miranda", but not "Farmer" or "Lin", that
- appeared as an Abstract, enter |(A/A)-(A/A)+C|
- at the "Enter Search:" prompt. Then enter all
- of the authors' names in the correct order,
- and then an |A| (for "Abstract") in the field
- for Citation type. Again, the letters will
- blink to remind you where you are. Then |G|o at
- the Search Menu to start your search.
-
- |Entering Years:|
- With one exception, all the text you
- enter is searched for as just that: text.
- The exception is for the |Y|ears field. If you
- specify a |Y| at the "Enter Search:" prompt,
- then JEPRS will allow you to enter either a
- single year (e.g., "1989") or a range of years
- ("1975-1984"). Note that you must specify the
- ENTIRE year; for example, "1975-77" will give
- you a nonsense answer; use "1975-1977"
- instead. The only short cut allowed is that
- you may skip the first year if you want to
- search for all references up to a given year;
- that is, "-1975" is equivalent to "1900-1975".
-
- ç────────────────────────────────Search Results
-
- Congratulations! JEPRS has found at
- least one successful match for the terms you
- entered. Use the up & down arrow keys to
- scroll through the list of successful matches.
- |PgUp| and |PgDn| can also be used if you have
- more than one screenful of references. Note
- that a number of features are available
- through the use of the function keys, des-
- cribed below.
- Pressing |Enter| will display the complete
- reference for the line that the cursor is
- sitting on. This actually brings up the |L|ist
- Screen, which will work just as if it were
- called up from the Main Menu with one excep-
- tion: |PgUp| and |PgDn| will display the next (or
- previous) |found| reference in the list,
- rather than the next reference in the data-
- base.
-
- |Function Keys:|
- As always, |Esc| takes you back to the
- previous menu, the Search Menu. (To get back
- to the Search Results screen without having to
- redo your search, press |F3| while at the
- Search Menu.)
-
- If you wish to modify this search, press
- |F4|. Why? Let's say that this search has
- yielded a lot more references than you want to
- see; you can now restrict your search by fur-
- ther checking those references already found
- to see if they match another specification you
- provide on the Modify Search Menu. More help
- is available at the Modify Search Menu.
-
- Pressing |*| will allow you to Mark and
- unMark the reference the cursor is on. Then
- the output function keys (for printer and text
- & number file output) will output all the
- Marked references, rather than just the refer-
- ence the cursor is currently on.
- |F5| will Mark all the references found.
- |F6| will invert all the Marks that you
- placed on the references (that is, all Marked
- references will become unMarked and all
- unMarked references will become Marked). To
- clear all the Marks, press |F5|, then |F6|.
-
- |F8| will insert only the number of the
- current reference (or all the Marked referen-
- ces, if any are Marked) into a Number File,
- for subsequent formatting at the |F|ormat com-
- mand at the Main Menu, or for exporting at the
- |E|xport command on the Utilities Menu.
-
- Pressing |F9| will take the reference
- displayed at the cursor (or all Marked refer-
- ences, if any are Marked) and print it on your
- printer in the currently defined journal
- output format (see the Global Defaults).
-
- |F10| will insert the current reference
- (or all Marked references, if any are Marked)
- into a Text File.
-
- î─────────────────────────────────Modify Search
-
- You have chosen to modify your search.
- This is done by entering a |+| (to require a
- match on an additional term to your current
- search) or a |-| (to search for references that
- don't have a specified term) followed by the
- first letter of the field (e.g., |A|uthor,
- |T|itle, or |J|ournal) that is to be searched.
-
- JEPRS will then ask you to enter the word
- or phrase that you want to search for. This
- whole process is very similar to the initial
- |T|erms command on the Search Menu, except that
- here only one additional search term may be
- specified each time.
-
- You can modify each original search a
- maximum of three times. The first time you
- modify it, instructions appear on the Modify
- Search screen; each additional time you modify
- it, the previous search term modifications
- (field name abbreviations and search word(s))
- are shown instead.
-
- ù─────────────────────────────Format References
-
- The |F|ormat Menu is where you can tell
- JEPRS to format your references exactly the
- way you want them. If you like the defaults
- just the way they are, just press |G|o and
- formatting begins. Otherwise, you can change
- any of the options listed below.
-
- |Format Style:|
- Here is where you can specify the format
- definition to use for formatting your refer-
- ences. More help is available when you select
- this item.
-
- |Input:|
- |I|nput tells JEPRS where to look for the
- reference numbers that you want formatted. The
- default is the Keyboard, but you also have a
- choice of a Number file or a subset (or all)
- of the references in a Reference file.
-
- |Output:|
- |O|utput allows you to specify where the
- exported references are directed to. The
- default is the screen, but you can turn on any
- combination of screen, printer, text file, and
- number file.
-
- |Defaults:|
- |P|age start # allows you to specify the
- page number at which JEPRS will start number-
- ing. For example, if you enter "29", then the
- formatted output will show "Page 29" as the
- first page, "Page 30" as the second page, etc.
- Note that you must use the |\P| command in the
- Heading of the Printer Definition in order
- for the page number to be displayed.
-
- |R|eplace |"| with |"|. This command is useful
- if you are trying to get comma-delimited out-
- put. In that case, if there are any double
- quotation marks in your references, they will
- be misinterpreted when you try to import this
- file into your new database. This command
- will therefore allow you to change all the
- '"' (double quotes) in your database to some
- other character you specify (for example, a
- backwards single quote '`').
-
- ░─────────────────────────────────────Utilities
-
- The |U|tilities Menu allows you to |I|mport
- and |E|xport references as well as |C|ompress the
- database when necessary. More help is availa-
- ble when you select any of these menus.
-
- |I|mport: Select this item when you have a
- file containing references you wish to import
- into your JEPRS database.
-
- |E|xport: Select this item when you wish
- to export any number of references from your
- JEPRS database into a format suitable for im-
- porting into another program.
-
- |C|ompress database: Use this feature to
- reduce the size of your database when you have
- a large number of "moved references".
-
- ┤───────────────────────────────────Import File
-
- |I|mport provides you with the ability to
- add to your database by reading in a file for-
- matted according to any one of several bio-
- medical format types. This includes MedLine
- (PaperChase, Current Contents on Diskette,
- and Reference Manager, among others) as well
- as CL-MedLine (a slightly different format)
- and BRS/Colleague. Use your communications
- or database software to create these files
- during a search. They can then be imported
- directly into JEPRS.
-
- Make sure that the Import File listed on
- the Global Defaults Menu is the name of the
- file you want to import. If not, press |Esc| to
- return to the |U|tilities Menu, then press |F2| to
- go to the Global Defaults Menu.
-
- |Defaults:|
- |R|emove subheadings: MedLine files in-
- clude some information that is not useful to
- most people, such as source of funding, and
- keyword subgroups. If this is |Y|es, JEPRS
- strips this material away before importing the
- reference.
- |E|dit during import: If set to |N|o, JEPRS
- reads through the import file and imports all
- the references without allowing you to edit
- or discard them. If you change this to |Y|es,
- then as each reference is imported, you are
- placed in Edit mode and you can modify the
- reference before saving it to the database.
- You also have the option of saving the
- imported reference as is or discarding it
- altogether.
-
- ╣─────────────────────────────Export References
-
- In order to provide compatibility with
- other biomedical reference management systems,
- JEPRS allows you to |E|xport references in the
- MedLine format. Once you check the |D|efaults
- to make sure they're what you want, just press
- |G| to Go.
-
- |Input:|
- |I|nput tells JEPRS where to look for the
- reference numbers that you want exported. The
- default is the Keyboard, but you also have a
- choice of a Number file or a subset (or all)
- of the references in a Reference file.
-
- |Output:|
- |O|utput allows you to specify where the
- exported references are directed to. The
- default is the screen, but you can turn on any
- combination of screen, printer, text file, and
- number file.
-
- |Defaults:|
- |R|emove printer codes: JEPRS lets you
- insert printer codes (for underlining, bold
- face, etc.) into your text as you add refer-
- ences to your database. However, these codes
- are not compatible with any other program.
- Therefore, if you choose |Y|es for this option,
- these codes will be stripped from your text as
- it is exported, preventing any problems with
- importing it into another program.
- |U|ppercase keywords: All MedLine formats
- have their keywords in uppercase letters, but
- JEPRS lets you have them in uppercase, lower-
- case, or mixed case. Set this to |Y|es if you
- want your keywords converted to uppercase as
- they are exported.
-
- ╛─────────────────────────────Compress Database
-
- JEPRS stores your references as effi-
- ciently as possible. Because of this, how-
- ever, JEPRS has to move the references
- around in the database whenever you edit them.
- This causes some space to be wasted in your
- reference database file. The |C|ompress Data-
- base screen and the |M|ain Menu both display the
- quantity of these "moved references". So if
- you're running out of disk space, you can use
- the |C|ompress Database feature to get rid of
- those moved references.
-
- Just press |G| to start the compression.
-
- |Insufficient Disk Space|
- In order to compress your database, JEPRS
- must make a temporary file that is the same
- size as your reference file. If there is not
- enough room on the current default drive,
- JEPRS will tell you to select a new disk drive
- for the temporary files. Place a new floppy
- disk in one of your drives and then enter the
- letter for that drive (or enter the letter for
- a hard disk).
- If you don't have any disks with suffi-
- cient space, just press |Esc| to return to the
- |U|tilities Menu.
-
-