Apache web server supports IPv6 native by maintainers since 2.0.14. Available patches for the older 1.3.x series are not current and shouldn't be used in public environment, but available at KAME / Misc.
Listen [3ffe:ffff:100::1]:80
<VirtualHost [3ffe:ffff:100::1]:80>
ServerName ipv6only.yourdomain.yourtopleveldomain
# ...sure more config lines
</VirtualHost>
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Listen [3ffe:ffff:100::2]:80
Listen 1.2.3.4:80
<VirtualHost [3ffe:ffff:100::2]:80 1.2.3.4:80>
ServerName ipv6andipv4.yourdomain.yourtopleveldomain
# ...sure more config lines
</VirtualHost>
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This should result after restart in e.g.
# netstat -lnptu |grep "httpd2\W*$"
tcp 0 0 1.2.3.4:80 0.0.0.0:* LISTEN 12345/httpd2
tcp 0 0 3ffe:ffff:100::1:80 :::* LISTEN 12345/httpd2
tcp 0 0 3ffe:ffff:100::2:80 :::* LISTEN 12345/httpd2
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